Two different modes of oscillation in a gene transcription regulatory network with interlinked positive and negative feedback loops

نویسنده

  • Rajesh Karmakar
چکیده

We study the oscillatory behaviour of a gene regulatory network with interlinked positive and negative feedback loop. Frequency and amplitude are two important properties of oscillation. Studied network produces two different modes of oscillation. In one mode (mode 1) frequency remains constant over a wide range amplitude and in other mode (mode 2) the amplitude of oscillation remains constant over a wide range of frequency. Our study reproduces both features of oscillations in a single gene regulatory network and show that the negative plus positive feedback loops in gene regulatory network offer additional advantage. We identified the key parameters/variables responsible for different modes of oscillation. The network is flexible in switching between different modes by choosing appropriately the required parameters/variables. ∗Email: [email protected]

برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

ثبت نام

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

منابع مشابه

Periodic Oscillation of Piecewise Linear Three-gene Regulatory Network with Negative Feedback Loops

In synthetic biology, we need not only to design the basic functional modules, but also to understand the parameters of the designed modules. In this area, the existing theoretical result about periodic oscillation is difficult to achieve. We study the Piecewise Linear three-gene regulatory network with negative feedback loop to show how to control the periodic oscillation.

متن کامل

Interlinking positive and negative feedback loops creates a tunable motif in gene regulatory networks.

Positive and negative feedback loops are often coupled to perform various functions in gene regulatory networks, acting as bistable switches, oscillators, and excitable devices. It is implied that such a system with interlinked positive and negative feedback loops is a flexible motif that can modulate itself among various functions. Here, we developed a minimal model for the system and systemat...

متن کامل

Noise Propagation in Gene Regulation Networks Involving Interlinked Positive and Negative Feedback Loops

It is well known that noise is inevitable in gene regulatory networks due to the low-copy numbers of molecules and local environmental fluctuations. The prediction of noise effects is a key issue in ensuring reliable transmission of information. Interlinked positive and negative feedback loops are essential signal transduction motifs in biological networks. Positive feedback loops are generally...

متن کامل

Network-based transcriptome analysis in salt tolerant and salt sensitive maize (Zea mays L.) genotypes

Identification of genes involved in salinity stress tolerance provides deeper insight into molecular mechanisms underlying salinity tolerance in maize. The present study was conducted in the faculty of agriculture of Urmia university, Iran, in 2018, with the aim of identifying genetic differences between two maize genotypes in tolerance to salinity stress, and the results of gene expression wer...

متن کامل

Antagonistic autoregulation speeds up a homogeneous response in Escherichia coli

By integrating positive and negative feedback loops, biological systems establish intricate gene expression patterns linked to multistability, pulsing, and oscillations. This depends on the specific characteristics of each interlinked feedback, and thus one would expect additional expression programs to be found. Here, we investigate one such program associated with an antagonistic positive and...

متن کامل

ذخیره در منابع من


  با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید

برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

ثبت نام

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

عنوان ژورنال:

دوره   شماره 

صفحات  -

تاریخ انتشار 2015